Updated: gotchas-skills.md (+$VAR paths, $() subshells, relative path resolution), decisions.md (+CLAUDE_PROJECT_ROOT, settings.yaml relative paths), process-lessons.md (+research history before building validators). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Skills Gotchas
Broken symlinks cause silent failures under set -e
Symptom: install.sh fails with exit 1 on a broken symlink.
Cause: readlink -f on a broken symlink returns an empty string, causing comparison failure under set -e.
Fix: Remove stale symlinks before re-running install. When skills move directories (e.g., from ~/dev/claude/custom-claude-skills/ to ~/dev/claude/projects/custom-claude-skills/), old symlinks break.
$VAR and ${VAR} in bang-command paths rejected by permission checker
Symptom: Skill fails with "Shell expansion syntax in paths requires manual approval" on cat $HOME/dev/claude/... or cat ${HOME}/....
Cause: Claude Code's Bash permission checker rejects any $VAR or ${VAR} expansion in file path arguments, even if the outer command matches an allowed-tools pattern.
Fix: Replace bang-commands that need dynamic paths with plain-text instructions telling Claude to use the Read tool at runtime. The Read tool bypasses the shell permission checker entirely.
$() command substitution in bang-commands is rejected
Symptom: Bang-command like git log --since="$(git log ...)" fails even though Bash(git *) is in allowed-tools.
Cause: The permission checker rejects any command containing $() subshells regardless of the outer pattern match.
Fix: Keep bang-commands simple. If complex logic is needed, have the skill instructions tell Claude to run it via tool calls instead.
Relative paths in bang-commands resolve differently based on CWD
Symptom: cat ../claude-foundations/settings.yaml resolves to the wrong path (outside sandbox) when skill is invoked from an unexpected CWD.
Fix: Use CLAUDE_PROJECT_ROOT env var instead of relative paths. Env var expansion (without $) isn't rejected by the permission checker when used in the SKILL.md body instructions rather than bang-commands.
Skills created mid-session are not available as slash commands
Symptom: A newly created skill doesn't appear when you type /skillname.
Cause: Skills are discovered at session start, not dynamically during the session.
Fix: Start a new Claude Code session to pick up newly created skills.